29 lines
670 B
Bash
29 lines
670 B
Bash
#!/usr/bin/env bash
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declare -a PLOTS
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COUNT=0
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while IFS="" read -r p || [ -n "$p" ];
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do
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if [[ -z "$p" ]]; then
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continue
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fi
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N="$(dirname "$p")/$(basename -s .case "$p")"
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T="${N}_case.trace.ron"
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P="${N}_case"
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H="${N}_case.jobs.html"
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echo "$COUNT $p -> $H"
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IFS=" "
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# PLOTS+=("$H")
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PLOTS[$COUNT]="$H"
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COUNT=$((COUNT+1))
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# if [ ! -f "$T" ]; then
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# snakemake -c1 "$T"
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# fi
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# if [ ! -f "$P.html" ]; then
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# ~/code/FRET/state2gantt/driver.sh "$T"
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# fi
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done < <(find ./remote/timedump -maxdepth 2 -type 'f' -iregex '.*\.case')
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# echo "${PLOTS[@]}"
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snakemake -c 6 --keep-incomplete "${PLOTS[@]}"
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